PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_27.35
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 185aa    MW: 20603.2 Da    PI: 8.992
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_27.35genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-121061255
                                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                 r+  + +Er+RR++++  +++L +llP+   ++  + s  + L++A+ YIk+Lq
  evm.model.supercontig_27.35 10 RTDRKTIERNRRNQMKVLYSKLNSLLPQE--TSRDRTSLPDQLQEATSYIKKLQ 61
                                 778899**********************6..49999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.93E-7665No hitNo description
SuperFamilySSF474595.89E-14685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.074860IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-81061IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-131077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-41466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MESNPSSSSR TDRKTIERNR RNQMKVLYSK LNSLLPQETS RDRTSLPDQL QEATSYIKKL  60
QVNVERMKEK KDRLMVGMER LGSAGSSSGN GSNRIDVHVT GSILQVVLVT GLDSQSMFNE  120
ILRLIHEEGA EIVNASFSVV DDNTVLHTIH AQVDQSELGH GHHKAARISE RLKKFVHDAD  180
HGAF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_27.35
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902337.11e-133transcription factor bHLH162
SwissprotF4JIJ72e-41BH162_ARATH; Transcription factor bHLH162
TrEMBLA5C0F42e-72A5C0F4_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_27.351e-132(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-43bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]