PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_27.40

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

SBP

Protein Properties

Length: 146aa MW: 16451.1 Da PI: 6.9849

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_27.40	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.1	3.4e-40	60	137	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+++C++d+ +ak+y++rhkvCe h+ka+ vlv+g++qrfCqqCsrfhe+sefD++krsCrrrLa+hnerrrk+++ evm.model.supercontig_27.40 60 CCQADHCTVDMGDAKRYYKRHKVCEYHAKASFVLVNGVQQRFCQQCSRFHEVSEFDDTKRSCRRRLAGHNERRRKSST 137 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF037575	1.9E-57	1	145	IPR017238	Squamosa promoter-binding protein
Gene3D	G3DSA:4.10.1100.10	1.0E-31	55	122	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.94	58	135	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.67E-38	59	140	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.4E-32	61	134	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009908	Biological Process	flower development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MGTSRAEGKR SLKEIEEDEE EEEDDDCTGG LGFEEEEKKK KKGRRGSSAA EAAGASMLPC 60 CQADHCTVDM GDAKRYYKRH KVCEYHAKAS FVLVNGVQQR FCQQCSRFHE VSEFDDTKRS 120 CRRRLAGHNE RRRKSSTDYI GDGSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-36	52	134	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_27.40

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021902083.1	1e-102	squamosa promoter-binding-like protein 3
Swissprot	Q38741	3e-43	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A1R3H4E4	2e-57	A0A1R3H4E4_9ROSI; Squamosa promoter-binding-like protein
STRING	evm.model.supercontig_27.40	1e-102	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM868	28	118
Representative plant	OGRP97	17	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	9e-41	squamosa promoter binding protein-like 5

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_27.40

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]