PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_27.46
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HSF
Protein Properties Length: 236aa    MW: 27242.7 Da    PI: 8.2049
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_27.46genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind99.62.9e-31431572103
                                  HHHHHHHHHCTG......................GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS
                 HSF_DNA-bind   2 Flkklyeilede......................elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61 
                                  Fl k+ye+le++                      e ++l+sw+++gn fvv+++ ef++ +LpkyFkh+nf+SF+RQLn+Yg
  evm.model.supercontig_27.46  43 FLLKTYELLEEAddghdhqqvmwcgsdqnfngdyEKNRLVSWNAEGNGFVVWNPAEFSDLLLPKYFKHNNFSSFIRQLNTYG 124
                                  999999999955566666777777777777777799********************************************** PP

                                  EEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                 HSF_DNA-bind  62 FkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
                                  Fkk+++++         weFk+++F+kg k++l +i rkk+e
  evm.model.supercontig_27.46 125 FKKTSSDR---------WEFKNEKFRKGCKHMLMEITRKKHE 157
                                  *****999.........**********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3333149IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.1E-3839154IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.0E-2743154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-116588IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.45E-2576154IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-11103115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-11116128IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MMIGRKFMED GNYDYNLGKI SCCSSSSSSI ASSSPKTKGP APFLLKTYEL LEEADDGHDH  60
QQVMWCGSDQ NFNGDYEKNR LVSWNAEGNG FVVWNPAEFS DLLLPKYFKH NNFSSFIRQL  120
NTYGFKKTSS DRWEFKNEKF RKGCKHMLME ITRKKHEPSV FPTYLRASPR EENSNNNNNG  180
DENNGLTLMM EENKSLKREK LELQMRIAQV KSLEIKLLDC LAQHVETQQN KEKKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A2e-157515417106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A2e-157515417106HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_27.46
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902177.11e-177heat stress transcription factor B-2a-like
TrEMBLA0A314ZQ474e-81A0A314ZQ47_PRUYE; Heat stress transcription factor B-2a
STRINGevm.model.supercontig_27.461e-176(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16597712
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.17e-36heat shock transcription factor B2A