PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2794.2
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 119aa    MW: 13541.6 Da    PI: 10.7901
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2794.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.44.4e-3069117351
                       G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                                   rlrWtp+LH++Fv+ave+LGG+++AtPk +l++m+vkgLt++hvkSHLQ
  evm.model.supercontig_2794.2  69 RLRWTPDLHHCFVHAVERLGGEDRATPKMVLQIMDVKGLTISHVKSHLQ 117
                                   9************************************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.25664118IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-2864117IPR009057Homeodomain-like
SuperFamilySSF466892.87E-1369117IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-2269118IPR006447Myb domain, plants
PfamPF002496.9E-769117IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MKRRGNGDLK TSLSSSSSSS LETISLHEYY NKSNYHMRVT RPRVEVNPVT VPEMRSTGVR  60
PYVRSKMLRL RWTPDLHHCF VHAVERLGGE DRATPKMVLQ IMDVKGLTIS HVKSHLQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-1969117452Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-1969117452Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-1969117351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1969117351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1969117351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1969117351Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-1969117452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-1969117452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-1969117452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-1969117452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-1969117452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-1969117452Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2794.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887158.17e-80uncharacterized protein LOC110806563, partial
SwissprotQ700D92e-26MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A2I4H0Z65e-38A0A2I4H0Z6_JUGRE; uncharacterized protein LOC109012570
TrEMBLA0A2I4H9B65e-38A0A2I4H9B6_JUGRE; uncharacterized protein LOC109014695
TrEMBLA0A2I4HP298e-39A0A2I4HP29_JUGRE; protein PHOSPHATE STARVATION RESPONSE 1-like
STRINGevm.model.supercontig_2794.26e-82(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.13e-31G2-like family protein