PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_28.61
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRF
Protein Properties Length: 225aa    MW: 25601 Da    PI: 10.2176
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_28.61genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.62.9e-2569112144
                          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                                  d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  evm.model.supercontig_28.61  69 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 112
                                  79***************************************998 PP
2QLQ621.6e-21843237
                          QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                                 +FTa+Q+q+L++Q+l++Ky++++ P+Pp+Ll+ai++
  evm.model.supercontig_28.61  8 PFTASQWQELEHQALIFKYMVSGIPIPPDLLFAIKR 43
                                 8*********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.0E-13743IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.5E-16841IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.182843IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9869113IPR014977WRC domain
PfamPF088796.1E-2170112IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSARNRFPFT ASQWQELEHQ ALIFKYMVSG IPIPPDLLFA IKRSCIDSPL SSRHIGWNCF  60
PMGLGRKIDP EPGRCRRTDG KKWRCSKEAY PDSKYCERHM HRGKNRSRKP VEVTTTTTTS  120
TQTISSIAKT PSSFAPSSHS LSSISSSETT HHHHLQYPYN HHPFLYSHTS SSRSAGIALP  180
PQDNTAHLFL ESASYSQADT DYRFVIVHKW TRLLSVPRKL DFRV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_28.61
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150423e-39AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901953.11e-149growth-regulating factor 1 isoform X3
TrEMBLA0A1U8PIL91e-90A0A1U8PIL9_GOSHI; growth-regulating factor 1-like isoform X2
STRINGevm.model.supercontig_28.611e-167(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45672651
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-54growth-regulating factor 5