PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_282.7

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 255aa MW: 28850.4 Da PI: 7.2371

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_282.7	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.7e-09	147	194	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++iN+++ L++l+P + +k + a +Le+ ++Y++sLq evm.model.supercontig_282.7 147 SHSIAERVRREKINKKMKCLQDLVPGC----NKMMGMAVMLEEIINYVHSLQ 194 8***********************9....778***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.50E-10	141	198	No hit	No description
SuperFamily	SSF47459	1.7E-16	141	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.983	143	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.0E-17	143	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.4E-7	147	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.6E-9	149	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MDMNMEMMKQ FTEMNPGFLE SISVSDYSGE TFWAQQEQSE IPANWVHNNL SSSTFNSNTG 60 HGGVLPVHRG TSSIIGDYFD QRKTRIVNEE STSNSQNKSS AKIAASSSTR KKNNLGKGKK 120 SRSSEKEMEK SEEVIHVRAK RGQATDSHSI AERVRREKIN KKMKCLQDLV PGCNKMMGMA 180 VMLEEIINYV HSLQNQVEFL SMELAAACSP YDFNHTLESI RKAQGTNPHE AEEMEKWVKE 240 RYGEQNCFQP TWPL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_282.7

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021912384.1	0.0	transcription factor bHLH75-like
Swissprot	A4D998	3e-48	BH075_ARATH; Transcription factor bHLH75
TrEMBL	A0A061EIH6	1e-103	A0A061EIH6_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	evm.model.supercontig_282.7	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17213	8	10
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	6e-48	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_282.7

Publications ? help Back to Top
Khan M, et al. Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling. Nat Commun, 2014. 5: p. 4687 [PMID:25134617] Eremina M, et al. Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991 [PMID:27655893] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776]