PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_287.4
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NF-YB
Protein Properties Length: 141aa    MW: 15399 Da    PI: 6.2617
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_287.4genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB169.73.4e-5326120397
                        NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 
                                  e++++lPianv+rimk++lP+nakisk+aket+qecvsefisfvt+eas+kc+re+rkt+ngdd++wala+lGf+dyv plk
  evm.model.supercontig_287.4  26 EHEKLLPIANVGRIMKQILPSNAKISKEAKETMQECVSEFISFVTGEASEKCRRERRKTVNGDDVCWALASLGFDDYVGPLK 107
                                  7899****************************************************************************** PP

                        NF-YB  85 vylkkyrelegek 97 
                                   yl+kyre+ege+
  evm.model.supercontig_287.4 108 RYLHKYREAEGER 120
                                  **********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.4E-5024133IPR009072Histone-fold
SuperFamilySSF471134.63E-3928137IPR009072Histone-fold
PfamPF008084.3E-273194IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.2E-185876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.2E-187795No hitNo description
PRINTSPR006157.2E-1896114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MADYSNSGDG GGGSIGNGGE DGVVIEHEKL LPIANVGRIM KQILPSNAKI SKEAKETMQE  60
CVSEFISFVT GEASEKCRRE RRKTVNGDDV CWALASLGFD DYVGPLKRYL HKYREAEGER  120
SSNNVSQNHK ATNNNNNLYN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-4319115197NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_287.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912306.11e-85nuclear transcription factor Y subunit B-5-like
SwissprotO822482e-54NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
SwissprotQ75IZ73e-54NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBLA0A067K7771e-63A0A067K777_JATCU; Uncharacterized protein
STRINGevm.model.supercontig_287.41e-100(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.17e-57nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]