PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_3.514
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family LBD
Protein Properties Length: 235aa    MW: 25235.5 Da    PI: 6.045
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_3.514genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.31.4e-2941081100
                       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGav 77 
                                  +C++C+ lr++C++dC++ p++     p++q++++ +++k++G++ +l+l++a  ++ r+ +++sl+yeA+ r+ +P+yG++
  evm.model.supercontig_3.514   4 SCNGCRALRKGCSDDCIIKPCLqwiqtPESQANATLFLAKFYGRAGLLNLINAGADDLRPSIFRSLLYEACGRIVNPIYGSA 85 
                                  6********************************************************************************* PP

                       DUF260  78 gvilklqqqleqlkaelallkee 100
                                  g+++++++ql+++++e++l +ee
  evm.model.supercontig_3.514  86 GLLWSGSWQLCEAAVEAVLKGEE 108
                                  ****************9998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.9553109IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-234103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MRISCNGCRA LRKGCSDDCI IKPCLQWIQT PESQANATLF LAKFYGRAGL LNLINAGADD  60
LRPSIFRSLL YEACGRIVNP IYGSAGLLWS GSWQLCEAAV EAVLKGEEIV QVSSDVALSS  120
STPPLKAGDI RHVSKQESSD VSNQLCKVKT RSRFKRPANK SKINSERADE SREDEGLKRR  180
RNEKSDGSVM GPSCGGDSGA EGDSVSVETV EPCLAKLEEP ADGSQLNLEL TLGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_3.514
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909352.11e-170LOB domain-containing protein 41-like
SwissprotQ9M8862e-74LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A438JZ911e-94A0A438JZ91_VITVI; LOB domain-containing protein 41
TrEMBLF6GTL01e-94F6GTL0_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_3.5141e-169(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1802789
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.19e-77LOB domain-containing protein 41