PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_3.98

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Nin-like

Protein Properties

Length: 247aa MW: 28401.5 Da PI: 8.6555

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_3.98	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.8	2.9e-25	136	185	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +e++l++++k+F+ pi+ AAke++v+lTvLK++CR+++I RWPhRkiksl evm.model.supercontig_3.98 136 SELELKEIQKHFDSPITMAAKEMKVGLTVLKKRCRELNITRWPHRKIKSL 185 789*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.779	120	207	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-21	138	185	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MENSAVNGDL VPKMEGDPLY QFDWVFFEES FEKIMELPPL PSLLELTSTD SYTEPLRKQE 60 STELTEIKGF DDEVNLYEDF TAGVKPLNVA GGSSSTELTE SDTRSLVHDR VRRGSSEDQK 120 EDGEERRMKR RRKKSSELEL KEIQKHFDSP ITMAAKEMKV GLTVLKKRCR ELNITRWPHR 180 KIKSLKSLIE NVRELGMDGE IAVLKEHKRL LEAVPDMELS QRTKKLRQVC FKANYKRRRA 240 LAKAAA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	133	RRMKRRRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_3.98

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021909328.1	0.0	protein RKD4
TrEMBL	A0A2N9IVW1	1e-64	A0A2N9IVW1_FAGSY; Uncharacterized protein
STRING	evm.model.supercontig_3.98	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	5e-35	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_3.98