PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_30.163
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MIKC_MADS
Protein Properties Length: 127aa    MW: 14379.9 Da    PI: 9.2328
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_30.163genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.52.2e-102251942
                                  HHHHHHHHHHHHHT-EEEEEEE-T CS
                        SRF-TF 19 gilKKAeELSvLCdaevaviifss 42
                                  g++KK + L++LCd++++vii+s+
  evm.model.supercontig_30.163  2 GLMKKVSKLCTLCDVKACVIIYSP 25
                                  9**********************8 PP
2K-box15.19.7e-0751913273
                         K-box 32 qreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73
                                  + eq + +G++L++L+l +L+ L   +e+ lk+i + K+e l
  evm.model.supercontig_30.163 51 EMEQSKKMGKSLHQLNLIDLNDLGWLIEQHLKEIQK-KMETL 91
                                  468899****************************75.55554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002664.79E-18258No hitNo description
PfamPF003191.4E-8226IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-11257IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MGLMKKVSKL CTLCDVKACV IIYSPYDSQP DVWPSPLGAQ HVLADFKRMP EMEQSKKMGK  60
SLHQLNLIDL NDLGWLIEQH LKEIQKKMET LNKSPQPQEV RDGGVMKGPS ETFTQIKENS  120
RVKKLQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_30.163
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910735.11e-83agamous-like MADS-box protein AGL80, partial
SwissprotQ9FJK31e-23AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2H5NT825e-35A0A2H5NT82_CITUN; Uncharacterized protein
TrEMBLV4S7966e-35V4S796_9ROSI; Uncharacterized protein
TrEMBLV4SWL05e-35V4SWL0_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_30.1631e-88(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-26AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]