PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_31.38
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 80aa    MW: 9026.27 Da    PI: 5.8591
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_31.38genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-09550244
                                 SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
              Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                  +WT+ E +++ +a + + ++   +W ++a+ +g  ++ +++k ++
  evm.model.supercontig_31.38  5 SPWTAKENKRFEKALAVYDKDtpdRWQKVANAIGGSKSVEEVKKHY 50
                                 58********************************99*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.84257IPR017884SANT domain
SMARTSM007171.4E-7356IPR001005SANT/Myb domain
PfamPF002492.7E-7550IPR001005SANT/Myb domain
SuperFamilySSF466893.52E-13561IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-4553IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MATSSPWTAK ENKRFEKALA VYDKDTPDRW QKVANAIGGS KSVEEVKKHY EILVQDVMCI  60
ESDQVPLPNY KSLKDNIEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-30278681RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_31.38
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901517.14e-49protein RADIALIS-like 5
SwissprotQ1A1731e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2R6R3G78e-32A0A2R6R3G7_ACTCH; Protein RADIALIS-like (Fragment)
STRINGevm.model.supercontig_31.383e-52(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.15e-34RAD-like 6