PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_33.181

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

G2-like

Protein Properties

Length: 225aa MW: 24623.8 Da PI: 10.0821

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_33.181	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.2	1.8e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl evm.model.supercontig_33.181 45 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.06	42	102	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.1E-26	45	100	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.69E-17	45	99	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.8E-32	45	100	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-7	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-23	131	177	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MYHAKKISTA NLVPHKPQGA EQFPSTGTLG GNVVNNSTSA GGGGKQRLRW TSDLHDRFVD 60 AITQLGGPDR ATPKGVLRVM GVPGLTIYHV KSHLQKYRLA KYLPESPADG LKDEKKDAGD 120 SITTPDSSPG VQINDTLRMQ MEVQKRLHEQ LEVQRQLQMR IEAQGKYLQK IIEEQQRIGS 180 KLKATEAVDK EKASESEASA DASEGLLSPR KKQKRNDDQA ASKS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_33.181

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021901350.1	1e-164	myb family transcription factor PHL7-like
Swissprot	Q9SJW0	6e-71	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A1U7ZTK7	1e-116	A0A1U7ZTK7_NELNU; myb family transcription factor PHL7-like
STRING	evm.model.supercontig_33.181	1e-164	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8753	25	36
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	9e-73	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_33.181