PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_33.206
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 238aa    MW: 26611.8 Da    PI: 4.2116
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_33.206genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.11.2e-21181385127
                           NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyW 83 
                                   +rF+P+d++l+ ++L++k+ g +l+  + i++  i k+ +P++L  kv   ++ e yfF+++    a ++r+  +  +gyW
  evm.model.supercontig_33.206  18 CRFDPNDHQLIINFLNRKAMGLPLPQ-NKIQTDAIDKWtNPQELADKVPLgRDLERYFFARTGILVADDRRNDVVGGRGYW 97 
                                   79*********************999.6688888877559****965555155599********9999888888999**** PP

                           NAM  84 katgk.dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                                   k   + ++e++  k+e++g k+ L+++   + +g+kt+W+m ey+
  evm.model.supercontig_33.206  98 KPMSEiTEEIVF-KDEKIGEKRELIYF---EADGSKTQWIMYEYT 138
                                   *88775788888.8999**********...678999********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.17114163IPR003441NAC domain
PfamPF023652.2E-1318138IPR003441NAC domain
SuperFamilySSF1019412.62E-2318163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDFGPEDLAS AMSLLSFCRF DPNDHQLIIN FLNRKAMGLP LPQNKIQTDA IDKWTNPQEL  60
ADKVPLGRDL ERYFFARTGI LVADDRRNDV VGGRGYWKPM SEITEEIVFK DEKIGEKREL  120
IYFEADGSKT QWIMYEYTAF LTIESPSSSP EAEIWVLYKL RNKGDVDEYD NVVSGTTGEA  180
AAAAALCVLN ELADDEEEYE PPPASTDTSE DGPDSKRRKG NTSGVVVADT LIVIMRI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_33.206
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901177.11e-176NAC domain-containing protein 83-like
STRINGevm.model.supercontig_33.2061e-175(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.12e-14NAC domain containing protein 41