PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_33.207
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 251aa    MW: 28307.4 Da    PI: 4.1321
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_33.207genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.77.6e-22191396128
                           NAM   6 rFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWk 84 
                                   rFhP+d++l+ ++L++k+ g +l+ +++ i+ +d   ++P++L  k+   e++e yfF+++    a ++r   +  +gyWk
  evm.model.supercontig_33.207  19 RFHPNDHQLILHFLTRKAMGLPLPQNRIyITAIDK-WTNPQELTDKIPLvEDSERYFFVRTGILVADDRRDDVVGGRGYWK 98 
                                   9*********************9997766777774.479****9544333788************99999999999***** PP

                           NAM  85 atgk.dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                      +  +e++  ++ ++g k+ L+++   + +g++t+Wvm+eyr+
  evm.model.supercontig_33.207  99 PASEiAEEIVF-NDDKIGEKRELIYF---EADGSETQWVMDEYRM 139
                                   66553788888.8999**********...677888********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.14314165IPR003441NAC domain
PfamPF023651.1E-1319139IPR003441NAC domain
SuperFamilySSF1019412.35E-2419165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDFDPADLAK AMSLLSLGRF HPNDHQLILH FLTRKAMGLP LPQNRIYITA IDKWTNPQEL  60
TDKIPLVEDS ERYFFVRTGI LVADDRRDDV VGGRGYWKPA SEIAEEIVFN DDKIGEKREL  120
IYFEADGSET QWVMDEYRMF LADEPPSSAK PDNVEEWLVY KLRNKKDVDV YDSTDLDESD  180
DVVSQIAREA AAAAALCILY ELLDNEEEDA PPASSTSTSE DLPDPKRRKG NTSGVIVADN  240
SDSDDDKKEN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-111916720170Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_33.207
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901179.10.0NAC domain-containing protein 68-like
STRINGevm.model.supercontig_33.2070.0(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.12e-13NAC domain containing protein 32