PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_34.210
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 509aa    MW: 56107.5 Da    PI: 5.2141
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_34.210genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.9e-182875148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT  Ed +lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l
  evm.model.supercontig_34.210 28 KGPWTSAEDAILVDYVNKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 75
                                  79******************************************9986 PP
2Myb_DNA-binding52.71e-1681124146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   +g++T+eE++ +++++++lG++ W++ a++++ gRt++++k++w++
  evm.model.supercontig_34.210  81 KGAFTPEEEQHIIELHAKLGNK-WARMAAELP-GRTDNEIKNYWNT 124
                                   799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6932375IPR017930Myb domain
SuperFamilySSF466891.09E-3025122IPR009057Homeodomain-like
SMARTSM007172.0E-152777IPR001005SANT/Myb domain
PfamPF002498.2E-162875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-242982IPR009057Homeodomain-like
CDDcd001671.43E-113075No hitNo description
PROSITE profilePS5129425.70176130IPR017930Myb domain
SMARTSM007173.0E-1580128IPR001005SANT/Myb domain
PfamPF002499.4E-1681124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-2683128IPR009057Homeodomain-like
CDDcd001673.74E-1183124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MPKGHRESLS VQEASTRENS EGGVHLKKGP WTSAEDAILV DYVNKHGEGN WNAVQKHSGL  60
SRCGKSCRLR WANHLRPDLK KGAFTPEEEQ HIIELHAKLG NKWARMAAEL PGRTDNEIKN  120
YWNTRMKRLQ RAGLPIYPED VCMQVLNGAR ESQNMDILPN GDTCSLDVLH TDNFEIPDVE  180
FKNLELNRGF LSYSPTFLDI PGSNMQKQGV SSSGRYNMMF PTITPSKRPR ESEFVMDNDT  240
DGGVLPFNQY MNYDHEKIND PFGLSYSYHS DSSSCDQLVL LSVPGSHALL NGNSSSSEPI  300
YGAMKLELPS LQYSGTQQDS WGTPASPLPS LESIDTLIQS PPKDQTRSDC PSPQNNGLLE  360
AVLYESEART RSKNYQHKQA SNTPYMFGDS MDGSPLNLCM MGQEAHGDPN SPLGHSTISV  420
LSECTPVNGT LSDEHQSAET KPGYDIKPMI AYAVKPLASY SPTVQTVENI GNSDNLNWLA  480
YSMADLKNKS IPRDAIGVLL GEDFGGNG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-30261282103C-Myb DNA-Binding Domain
1msf_C1e-30261282103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_34.210
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021900987.10.0transcription factor GAMYB-like
TrEMBLA0A291EX610.0A0A291EX61_9ROSI; Transcription factor GAMYB
STRINGevm.model.supercontig_34.2100.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.34e-92myb domain protein 33