PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_34.41
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 195aa    MW: 22414.1 Da    PI: 9.9233
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_34.41genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.62.2e-151150342
                                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                                 i n+  r+v + kR +g++KK +ELS+LCd+e++ ii+++
  evm.model.supercontig_34.41 11 IVNDKARKVAYKKRCKGLIKKVNELSILCDVEACAIIYGE 50
                                 77999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-17160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.586150IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-9323IPR002100Transcription factor, MADS-box
CDDcd002662.40E-24385No hitNo description
SuperFamilySSF554551.57E-22395IPR002100Transcription factor, MADS-box
PfamPF003192.7E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MVRKSVKIAY IVNDKARKVA YKKRCKGLIK KVNELSILCD VEACAIIYGE YSSQPEVWPS  60
SSKAQDVITR FQMMPESEQK KKILNQESYL IERLHKITEK LDKQVKRNRE EELTQIMLKS  120
LSIRCIKDLE LKDLDDLGWI INRNMKEIEW RKNKLKSVDN NSKLAQETPK SSAEATPPVQ  180
VTALAANPSI HEKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_34.41
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021900917.11e-139agamous-like MADS-box protein AGL80
STRINGevm.model.supercontig_34.411e-139(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-35AGAMOUS-like 80