PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_357.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 232aa    MW: 26570 Da    PI: 7.2964
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_357.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-1614101499
                                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                  v+  s +l+s  l +p  f++++++   +s t  l+ +s + W v l   ++ ++ ++ kGW  Fv+++ ++ gD +vF++d
  evm.model.supercontig_357.1  14 VF--SCNLSSEKLKIPSGFIKHMESR--QSGTAFLTGPSRNMWHVDL--IQQNDGLFFHKGWPAFVSDHLIEHGDLLVFRYD 89 
                                  55..77889999********666644..777****************..7788889*************************9 PP

                                  SSSEE..EEEEE-S CS
                           B3  86 grsefelvvkvfrk 99 
                                  g+ +f  +v+vf++
  evm.model.supercontig_357.1  90 GELNF--TVQVFDQ 101
                                  86666..9**9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-214104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-216104IPR015300DNA-binding pseudobarrel domain
CDDcd100172.20E-169100No hitNo description
PROSITE profilePS5086313.0569102IPR003340B3 DNA binding domain
SMARTSM010198.6E-1011102IPR003340B3 DNA binding domain
PfamPF023624.4E-1413101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEMCDARKPH FFDVFSCNLS SEKLKIPSGF IKHMESRQSG TAFLTGPSRN MWHVDLIQQN  60
DGLFFHKGWP AFVSDHLIEH GDLLVFRYDG ELNFTVQVFD QSACEKEAAF HAKCNQEHGT  120
FDQHAKKKRE REEMVDSLDR DSEGLLKKIR ENSSELQPEC IDKNQDTDVD INVKKNFGHE  180
KQVTCKAYGE ANSSKETKHY GTPYGIFSMP SQSKRLDKRK GKGCCALFMY K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_357.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911743.11e-148B3 domain-containing protein Os11g0197600-like
TrEMBLE0CPD44e-64E0CPD4_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_357.11e-174(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16907911
Representative plantOGRP7653917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.13e-18B3 family protein