PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_36.105
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family SBP
Protein Properties Length: 951aa    MW: 105686 Da    PI: 7.3626
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_36.105genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.89.9e-41165241278
                                   -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                           SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                   Cqv++C++dls+ak+yhrrhkvCe hska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  evm.model.supercontig_36.105 165 CQVDNCKEDLSNAKDYHRRHKVCELHSKATKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 241
                                   **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-33159226IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.069162239IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-37163243IPR004333Transcription factor, SBP-box
PfamPF031105.2E-30165238IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 951 aa     Download sequence    Send to blast
MEEVGAQVAP PIFIHQTLTS RFCEAPPIGR KRDLSYQTPN FLPHHNHQQQ LLPPSNSQQR  60
FMPARDNWNP KLWDWDSVRF VAQPLDPEVL RLGNPAATEQ RKIKDYIGGN GNAALTLKKN  120
AVGPEEDESL QLNLGGGLVA VEEPVSRSNK RVRSRSPGGG NYPKCQVDNC KEDLSNAKDY  180
HRRHKVCELH SKATKALVGK QMQRFCQQCS RFHPLSEFDE GKRSCRRRLA GHNRRRRKTQ  240
PEDVTSRMLL PGSQDNTTNG KLDLVNLLAA FARAQGKNED KSVNSSTVPD RDQLINILNK  300
INSLPLPVDL ASKLQNVGGF TKKLPEQPLS NHQNEMNGTS RSTMDLLAVL SATLAASSPD  360
ALALLSQKSS QSTVSDKTMS TVPDQTAGTN LQKCLEFPAV GGERSSSSYQ SPVDDSDGQV  420
QDGRSNLPLQ LFCSSPEDDS PPKLPSSRKY FSSDSSNPIE ERSPSSSPVV QKLFPMQVTT  480
GTIMSEKMSI DKEGKTHVES SRTRGMPLEL FGRPNRGADN GSVQSFPYQA GYTSSSGSDH  540
SPSSLNSDAQ DRTGRISFKL FDKDPSHFPA ELRTQIFNWL SNSPSEMESY IRPGCVVLSV  600
YVLMSSAAWE QLEGNLLQQV NCLVQDSYSD FWREARFLVH IGRRLASHKD GKIRLCKSWR  660
TWSSPELILV SPLAVVGGQE TTLSLRGRNL SNQRTKIHCM YTGGYKTMEI TGSTCQGTAY  720
DEIKLGGFRI QDACPGVLGR CFIEVENGFK GNSFPVIIAD ATICNELRVL ENEFDDDTKV  780
CDIISEEKAR DFDRPISREE ILHFLNELGW LFQRKATITK LESSDYSLSR FKFLLVFSVE  840
RDFCALVKAL IDMLVESNLD IHGLSKESLE TLTEIQLLNR AVKRRSRKMA DLLIHYSIGV  900
ADDTSRKYIF PPNLVGPGGI TPLHLAACTS DSDDMIDALT NDPQEFVSSE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-29156238284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1879884RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_36.105
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021900760.10.0squamosa promoter-binding-like protein 14
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLA0A061FG270.0A0A061FG27_THECC; Squamosa promoter binding protein-like 14
STRINGevm.model.supercontig_36.1050.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Representative plantOGRP71381115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]