PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_37.108
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 403aa    MW: 45379.3 Da    PI: 6.9491
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_37.108genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31001.4e-31139243199
                                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                   f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++g
  evm.model.supercontig_37.108 139 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKGWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAG 219
                                   89****************************66677899******************************************* PP

                                   -EEEEEE-.SS.SEE..EEEEE-S CS
                            B3  78 DfvvFkld.gr.sefelvvkvfrk 99 
                                   D+v F++  g+  + +l++ ++r+
  evm.model.supercontig_37.108 220 DIVSFQRGvGEaGKDRLYIDWRRR 243
                                   ******665888999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-41132246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-29136242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-24137226No hitNo description
SMARTSM010199.3E-23139244IPR003340B3 DNA binding domain
PfamPF023624.7E-29139243IPR003340B3 DNA binding domain
PROSITE profilePS5086314.72139244IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MEFGRDQGFY GEEEEEHLSH KGKHPFSNYS FSTSHSSSSS HFKPQNPALL TGASRWDSQI  60
HNIGSWLGNR YDPDEEYNSK SCSDGGVTGK LDFMDASPAT ELDEPPQADS DSSSSVLELH  120
RTGGATADTV LPIEKEHMFD KVVTPSDVGK LNRLVIPKQH AEKYFPLDSS SNEKGLLLNF  180
EDRNGKGWRF RYSYWNSSQS YVMTKGWSRF VKEKKLDAGD IVSFQRGVGE AGKDRLYIDW  240
RRRPDAPDPT HHFPLHRSIP WSPLLLRPQT MARDHHFHLP HVASLNRASY YGGSVVNPVG  300
TMGSVLYLRP GSQQMGMVEW PQHQHQREHP MVFDSVPVVH GKAAAKRLRL FGVNMDCPIS  360
NSEEHETLTH LSSSSSSSQH SLQLRLYNGT PFTPTDFLNK EN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-661342443114B3 domain-containing transcription factor NGA1
5os9_B5e-661342443114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_37.108
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021900439.10.0B3 domain-containing protein Os03g0120900-like
SwissprotQ8LMR91e-78Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0D2Q2161e-144A0A0D2Q216_GOSRA; Uncharacterized protein
STRINGevm.model.supercontig_37.1080.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.17e-76B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]