PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_3890.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 239aa    MW: 27795.3 Da    PI: 8.5644
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_3890.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00058170186117
                                   EEETTTTEEESSHHHHH CS
                       zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                                   y+Cp+Cg++++  + L+
  evm.model.supercontig_3890.1 170 YVCPNCGRRYNALDALR 186
                                   9*********9998885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5134434.00816147IPR017919Transcription factor TFE/TFIIEalpha HTH domain
SMARTSM005312.1E-6848218IPR002853Transcription initiation factor IIE subunit alpha, N-terminal
PfamPF020025.1E-750106IPR024550TFIIEalpha/SarR/Rpc3 HTH domain
SuperFamilySSF467854.42E-650106IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.5E-552110IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.30.40.106.2E-21156215IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF577832.89E-9156211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006367Biological Processtranscription initiation from RNA polymerase II promoter
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSFNDTPHRS ISLEPFNRLV KLAARAFYDD ITTKGDNQPK TGRSDNRGIA VVVLDALTRR  60
QWVREEDLAK DLKLHSKQLR RTLRFFEEEK LVTRDHRRET ARGAKMYSAA VAATADGQHT  120
GKGDEKVKLH THSYCCLDYA QIYDVVRYRL HRMKKKLKDE LEDKNTVQEY VCPNCGRRYN  180
ALDALRLVSL EDEYFHCENC NGELVAESDK IASQEVGDGD DNARRRRREK LKDMLQNME
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224229RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_3890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021906206.11e-178general transcription factor IIE subunit 1-like
TrEMBLD7SQ271e-159D7SQ27_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_3890.11e-178(Carica papaya)