PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_39.35
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ARR-B
Protein Properties Length: 454aa    MW: 49546.2 Da    PI: 5.9466
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_39.35genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like24.37e-08217266151
                      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                                  k+r+  +++L  +F  +v+ L   ++A Pk+ l +m+v+ Lt  +v+SH Q
  evm.model.supercontig_39.35 217 KQRMGCNHDLELEFTAVVSAL-RDKEARPKSTLSFMDVPELTQPQVASHKQ 266
                                  7899999**************.8899***********************88 PP
2Response_reg36.91.9e-13231301109
                                  EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEEST CS
                 Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtah 80 
                                  vl+vd + + ++ l ++l   +y +v+++++g  a +l+ e+   + l+++ +++ +m+ + +lk  r+++  +  ++++++
  evm.model.supercontig_39.35  23 VLVVDQDTSTLMYLSSVLGYYKY-NVTTTESGAVAANLILEQPdrFKLVMTSMKLRDMNIIVFLKIVRRRG--IATVLMGSE 101
                                  89*********************.***************666666************************99..********* PP

                                  TTHHHHHHHHHTTESEEEESS--HHHHHH CS
                 Response_reg  81 geeedalealkaGakdflsKpfdpeelvk 109
                                   e+e +l+al+ G+  +l+Kp++p+++++
  evm.model.supercontig_39.35 102 TEMECTLKALQDGVCFCLEKPISPQNVRD 130
                                  ************************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.1E-1719173No hitNo description
SuperFamilySSF521724.55E-1619138IPR011006CheY-like superfamily
SMARTSM004481.4E-421132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.8822136IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.4E-923130IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.54E-924134No hitNo description
Gene3DG3DSA:1.10.10.605.6E-7215266IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEVLNNDILP KDSIPTFAQG LSVLVVDQDT STLMYLSSVL GYYKYNVTTT ESGAVAANLI  60
LEQPDRFKLV MTSMKLRDMN IIVFLKIVRR RGIATVLMGS ETEMECTLKA LQDGVCFCLE  120
KPISPQNVRD VWQHGIKKNR SNEIGSIKEG ENGNGVGENQ AKANPQSIPV SNRKEPNAGS  180
GNGQSKVRKI RSAFEDTSVN AAWEEGEEDK GGNCAKKQRM GCNHDLELEF TAVVSALRDK  240
EARPKSTLSF MDVPELTQPQ VASHKQIGDS LNNASRVQVG SSHEVQNNNS SLQIGTSSNN  300
VQNNASRVQV GSSCEVGSSL NNVQNNASRA QVGSSYGLQN NNMLLQPGSS LNWLQNNLSM  360
FHPRPSFNFQ NNNAALQCES SLDVQDDEVS SIYRPQPEGM QETLLVLQQG SSSSSHGLWK  420
NISNLRPGIP SDSYLPPPTN QSQNHGVTDY QIL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_39.35
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911631.10.0two-component response regulator ARR2-like
STRINGevm.model.supercontig_39.350.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8222311
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.14e-22response regulator 10