PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_39.37

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

G2-like

Protein Properties

Length: 104aa MW: 11396.7 Da PI: 7.6962

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_39.37	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	29.2	2e-09	55	102	1	49
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSH 49 k+r++W+++L +F +v+ L +++ Pk+ l +++v+ Lt +v+SH evm.model.supercontig_39.37 55 KQRMVWNHDLELEFTAVVSAL-MDKETRPKSALSFIDVPELTQPQVASH 102 79*****************.667788******************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-9	53	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-8	55	102	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
MNPQSIPVSN RKEPNAGPGN GQSKVRKTKS AFENTSVNAA WEDGEEDKGG NYAKKQRMVW 60 NHDLELEFTA VVSALMDKET RPKSALSFID VPELTQPQVA SHK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_39.37

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021893863.1	2e-56	putative two-component response regulator-like APRR6
Refseq	XP_021911631.1	5e-56	two-component response regulator ARR2-like
STRING	evm.model.supercontig_39.37	2e-71	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP8222	3	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59570.1	9e-08	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_39.37