PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_4.138
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 228aa    MW: 25692.8 Da    PI: 8.8344
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_4.138genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM140.21.2e-43141321122
                          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                  lppGfrF+Ptdeelv +yLk kv + +l++ ++i++v+++k++PwdLp +    e+e yfFs+++ ky++g+r nrat sgy
  evm.model.supercontig_4.138  14 LPPGFRFQPTDEELVFRYLKCKVFSFPLPA-SIIPDVNLCKYDPWDLPGE---LEQERYFFSSKEAKYRNGNRINRATVSGY 91 
                                  79****************************.89***************55...46799************************ PP

                          NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWv 122
                                  Wkatg+d+++ s  k++ vg+kktLvfykg+ p+g +t+W 
  evm.model.supercontig_4.138  92 WKATGSDRQISSPrKNQMVGMKKTLVFYKGKPPHGFRTSWN 132
                                  ***********9867778**********************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-489148IPR003441NAC domain
PROSITE profilePS5100542.13814169IPR003441NAC domain
PfamPF023651.2E-1915131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAKFNFVRDG AMRLPPGFRF QPTDEELVFR YLKCKVFSFP LPASIIPDVN LCKYDPWDLP  60
GELEQERYFF SSKEAKYRNG NRINRATVSG YWKATGSDRQ ISSPRKNQMV GMKKTLVFYK  120
GKPPHGFRTS WNVLSEMEKW VICHVYMRKR SSSDQNDDGD HVGANQGYKN YNAEMGQLKF  180
FDFVVRDGEK IGTSSGPNCS SSSSSNSSGI TAASSSESDD LEESSAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-381215215169NO APICAL MERISTEM PROTEIN
1ut4_B3e-381215215169NO APICAL MERISTEM PROTEIN
1ut7_A3e-381215215169NO APICAL MERISTEM PROTEIN
1ut7_B3e-381215215169NO APICAL MERISTEM PROTEIN
3swm_A4e-381215218172NAC domain-containing protein 19
3swm_B4e-381215218172NAC domain-containing protein 19
3swm_C4e-381215218172NAC domain-containing protein 19
3swm_D4e-381215218172NAC domain-containing protein 19
3swp_A4e-381215218172NAC domain-containing protein 19
3swp_B4e-381215218172NAC domain-containing protein 19
3swp_C4e-381215218172NAC domain-containing protein 19
3swp_D4e-381215218172NAC domain-containing protein 19
4dul_A3e-381215215169NAC domain-containing protein 19
4dul_B3e-381215215169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_4.138
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908918.11e-152NAC domain-containing protein 83
SwissprotQ9FY932e-67NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0M4FP122e-84A0A0M4FP12_MANES; NAC transcription factors 34
STRINGevm.model.supercontig_4.1381e-170(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-69NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]