PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_4.179
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 236aa    MW: 26774.5 Da    PI: 9.8303
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_4.179genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.5e-1387139155
                                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  +++ h  +Er+RR+++ + ++ Lr+llP ++   ++K   ++   +Av+YIk+Lq
  evm.model.supercontig_4.179  87 KKMHHRDIERQRRQEMATLYASLRSLLPLDF--IKGKRAISDHMNEAVNYIKHLQ 139
                                  6899*************************75..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-1384153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.19E-1086143No hitNo description
PROSITE profilePS5088813.59886138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-1087139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1087154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-492144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MFPLQQSNEL CFRISSSPHH QHKIPQDLIL SCALTDGMSD MIAVDNNLGK SRRRKVCGMA  60
STKTTERHDL HHPQEFGTDN HESNNKKKMH HRDIERQRRQ EMATLYASLR SLLPLDFIKG  120
KRAISDHMNE AVNYIKHLQK NIKELSVKRN RLKQFDSSTA GSINSNSDSS SSMIVNQSLV  180
GVEIMFSSGF WAKSLRLSRV LHVILEEGLC VRSCTSARAD DKFLHTIQAE LFTTQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_4.179
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908994.11e-171transcription factor bHLH36-like
SwissprotQ9FLI12e-44BH036_ARATH; Transcription factor bHLH36
TrEMBLA0A067JQS61e-66A0A067JQS6_JATCU; Uncharacterized protein
TrEMBLB9I4H59e-67B9I4H5_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_4.1791e-175(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Representative plantOGRP1638838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.12e-40bHLH family protein