PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_41.83

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Trihelix

Protein Properties

Length: 394aa MW: 43165.8 Da PI: 9.7591

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_41.83	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.7	2.8e-22	77	168	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsesss 77 +W+++e+ aLi+a+r+++ +lrrg+lk+++W+ev++++ + ++++qC++k+e+l+kry+++ +++++ s+ ss evm.model.supercontig_41.83 77 CWSHDETVALIDAYRDKWYTLRRGNLKATHWQEVADAVarrcPAASPPKTAVQCRHKMEKLRKRYRAEIQRARSMpISRFSS 158 7********************************99966556667799*********************9669 PP trihelix 78 tcpyfdqlea 87 ++++f++++a evm.model.supercontig_41.83 159 SWVHFKRMDA 168 ******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.9E-23	76	169	No hit	No description
SMART	SM00595	6.0E-14	85	174	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MSAPPSPTIQ NPTPPPPPPN PSPTPTQSSP PKPQITPPAS TSVPGIVTIA ADGSAVAAAV 60 TTTAAPSTNP RRLPPPCWSH DETVALIDAY RDKWYTLRRG NLKATHWQEV ADAVARRCPA 120 ASPPKTAVQC RHKMEKLRKR YRAEIQRARS MPISRFSSSW VHFKRMDAME KGPSAKPDYN 180 SDSPDEDNDE DEEDDLDQDL YDDMYKNGGG VVNTRSMQRL YNRNGIVGGG GSSSSGGTGF 240 RIRIPTGVSI AQPGPRFYGK IDQKYAGISN SNANSSPNSN PKVGFGAGSN YATKVLRGCE 300 EMGRSGLGGK REREKESDPM TEMVGAIKLL GDGFVRMEQM KMEMAREMEA MRMEMEMKRT 360 EMILESQQRI VEAFAKAFSE KRKKPKRMPS PDS*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MSAPPSPTIQ NPTPPPPPPN PSPTPTQSSP PKPQITPPAS TSVPGIVTIA ADGSAVAAAV  60
TTTAAPSTNP RRLPPPCWSH DETVALIDAY RDKWYTLRRG NLKATHWQEV ADAVARRCPA  120
ASPPKTAVQC RHKMEKLRKR YRAEIQRARS MPISRFSSSW VHFKRMDAME KGPSAKPDYN  180
SDSPDEDNDE DEEDDLDQDL YDDMYKNGGG VVNTRSMQRL YNRNGIVGGG GSSSSGGTGF  240
RIRIPTGVSI AQPGPRFYGK IDQKYAGISN SNANSSPNSN PKVGFGAGSN YATKVLRGCE  300
EMGRSGLGGK REREKESDPM TEMVGAIKLL GDGFVRMEQM KMEMAREMEA MRMEMEMKRT  360
EMILESQQRI VEAFAKAFSE KRKKPKRMPS PDS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_41.83

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021900052.1	0.0	trihelix transcription factor ASIL2
TrEMBL	A0A0D2S0Z5	1e-166	A0A0D2S0Z5_GOSRA; Uncharacterized protein
STRING	evm.model.supercontig_41.83	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8963	25	34
Representative plant	OGRP4059	11	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-86	Trihelix family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_41.83