PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_42.100
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 86aa    MW: 10030.6 Da    PI: 10.3622
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_42.100genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM22.92.3e-0735576128
                           NAM  76 ratksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                                   r +  g W++   + ev++ ++++vg kk+L+f ++ ++++ e+++ +mhe+ l
  evm.model.supercontig_42.100   3 RRVGYGAWRTEQ-SVEVVDDHDNVVGHKKMLTFEEKkKKKNIENSRRIMHEFFL 55 
                                   5567899*9665.567777799************6537777889*******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100510.63175IPR003441NAC domain
SuperFamilySSF1019411.15E-7358IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MDRRVGYGAW RTEQSVEVVD DHDNVVGHKK MLTFEEKKKK KNIENSRRIM HEFFLRDASI  60
VLPSNAVIGH KLKHQSPYLT ERKII*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_42.100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894656.17e-17uncharacterized protein LOC110812238
RefseqXP_021894657.17e-17uncharacterized protein LOC110812239
RefseqXP_021894658.17e-17uncharacterized protein LOC110812240
RefseqXP_021910774.13e-17NAC domain-containing protein 19-like, partial
STRINGevm.model.supercontig_42.1005e-57(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5881218