PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_42.167
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 203aa    MW: 22968.4 Da    PI: 4.5886
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_42.167genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.85.7e-2981371128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGf+F Ptdeel++++L +k+++ +++    i++++ y+++P++L+ k+  + +++yfF++  +k+ +g +    t++g
  evm.model.supercontig_42.167   8 LPPGFQFCPTDEELITHFLYRKASRLPCHP--NIPHLHFYRSDPSHLQGKAVVSGNRYYFFTQVGSKEINGGK----TENG 82 
                                   79**********************999777..6**************9666677899*******999988765....667* PP

                           NAM  82 yWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   yWka  +++e  ++        ++ l+g+kk Lvf+ g+ p++ +t+W+m++y+l
  evm.model.supercontig_42.167  83 YWKAVDEEEEEEEEgeaifsrgNKLLIGTKKHLVFFLGQPPSAIQTNWFMEQYHL 137
                                   ****9998887776455555444445***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-334144IPR003441NAC domain
PROSITE profilePS5100530.3638158IPR003441NAC domain
PfamPF023651.6E-199137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGDGSMNLPP GFQFCPTDEE LITHFLYRKA SRLPCHPNIP HLHFYRSDPS HLQGKAVVSG  60
NRYYFFTQVG SKEINGGKTE NGYWKAVDEE EEEEEEGEAI FSRGNKLLIG TKKHLVFFLG  120
QPPSAIQTNW FMEQYHLPTS NITSSERKKW VYVEFMMVGE GNSQGFSHSS SGDNDEDGIE  180
LSCLDEMFFS LHDDLEDVTS PN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-2621379140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_42.167
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899969.11e-151NAC domain-containing protein 104-like
TrEMBLA0A1L2DX181e-134A0A1L2DX18_CARPA; NAC1 protein
STRINGevm.model.supercontig_42.1671e-150(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.16e-42xylem NAC domain 1