PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_43.109
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 328aa    MW: 37239.6 Da    PI: 6.4018
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_43.109genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.21e-181361448
                                  -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT....SEEEE CS
                        SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst....gklye 48
                                  e k +r vtfskRr g++ KA EL+vLCd +vav++ s++    +k+y+
  evm.model.supercontig_43.109 13 ETKEQRAVTFSKRRRGLFNKAAELCVLCDFQVAVLVSSPNpaklNKFYT 61
                                  67899*********************************97433345555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.58E-21278IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.698252IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-22265IPR002100Transcription factor, MADS-box
CDDcd002661.00E-23482No hitNo description
PRINTSPR004046.7E-10424IPR002100Transcription factor, MADS-box
PfamPF003196.9E-171362IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-102439IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-103960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MMRRRKLAME KRETKEQRAV TFSKRRRGLF NKAAELCVLC DFQVAVLVSS PNPAKLNKFY  60
TFGYSSVNAV LDAFLNSRAP PPMADETRAS VLSLCQNIQV LEREVKESRR PREKKQKKIE  120
AFWFDVEDFD RYRAISELDL IIYKLEKLRE NVMVRVSVPD FSTPIQNSVS PISVATGTNP  180
NEFNSYFQNH HLLTCNFNLG KRASISDSTL VATTSNDNQF DCYNINGDRD DHLTDNLQFV  240
GSATNNNGYD HHYGYNNPRG DDNLCSLDDQ IVGSSRNDLY EAPHLFSNDM NMTNPTNKNF  300
PIFPADINGD GGNNVFDHSG LLFFNDN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_43.109
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899649.10.0agamous-like MADS-box protein AGL62
STRINGevm.model.supercontig_43.1090.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17339310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27130.11e-20AGAMOUS-like 39