PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_43.122
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 89aa    MW: 10094.5 Da    PI: 9.8588
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_43.122genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.22.4e-201461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd++l+++++++G g+W++ ++  g++R++k+c++rw +yl
  evm.model.supercontig_43.122 14 KGPWTPEEDKKLIEYIEEHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                                  79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-27764IPR009057Homeodomain-like
PROSITE profilePS5129425.155965IPR017930Myb domain
SMARTSM007172.1E-161363IPR001005SANT/Myb domain
PfamPF002491.2E-191461IPR001005SANT/Myb domain
SuperFamilySSF466896.12E-251588IPR009057Homeodomain-like
CDDcd001671.39E-121661No hitNo description
Gene3DG3DSA:1.10.10.602.8E-86588IPR009057Homeodomain-like
PROSITE profilePS512947.0646688IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MGRSPYSDGN GVKKGPWTPE EDKKLIEYIE EHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEDEEKTIIN LHSVLGNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-171488780B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_43.122
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899651.12e-59transcription factor MYB16
SwissprotQ9SBF31e-51MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A0K9RLU61e-51A0A0K9RLU6_SPIOL; Uncharacterized protein
TrEMBLA0A2I0AC759e-52A0A2I0AC75_9ASPA; Transcription factor MYB39
STRINGevm.model.supercontig_43.1225e-59(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.15e-54myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]