PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_43.48
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NF-YC
Protein Properties Length: 141aa    MW: 15982.4 Da    PI: 9.3377
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_43.48genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC42.11.9e-1310911797
                        NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                                  +  +P  r+k+i+k d+d++++ +ea  l +   +lf+  l  +s     e+kr+tlk  d+  av+r   + dfl+d  p
  evm.model.supercontig_43.48 10 VRPGFPTPRVKRIMKLDKDINKVNSEALFLTTCCADLFLRFLVEKSAEIVAEKKRKTLKLEDLRIAVKRHRpTSDFLLDSLP 91
                                 45679**********************99998888999999999***********************9975389*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008082.3E-171476IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.0E-181491IPR009072Histone-fold
SuperFamilySSF471132.18E-151479IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MAEEENTEPV RPGFPTPRVK RIMKLDKDIN KVNSEALFLT TCCADLFLRF LVEKSAEIVA  60
EKKRKTLKLE DLRIAVKRHR PTSDFLLDSL PIPTVSMDRL VTDRAQSRPI AEKPVPAGTR  120
RIDSFFRKSE NEAPTETNDS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_43.48
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899616.12e-96nuclear transcription factor Y subunit gamma
TrEMBLA0A0D2PU791e-63A0A0D2PU79_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JXK11e-63A0A1U8JXK1_GOSHI; DNA polymerase epsilon subunit C-like
TrEMBLA0A2P5SJG31e-63A0A2P5SJG3_GOSBA; Uncharacterized protein
STRINGevm.model.supercontig_43.487e-96(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Representative plantOGRP94721213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.12e-46nuclear factor Y, subunit C13