PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_43.77

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

CAMTA

Protein Properties

Length: 151aa MW: 17861.3 Da PI: 9.0853

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_43.77	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	174.4	1.5e-54	13	127	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlyc 83 +e k+rwlk+ e++ iL+n+ek+elt+e++++p gsl L+n++++r+frkDG+sw++kkdg+++ E+he+LKvg++e+l+c evm.model.supercontig_43.77 13 QEaKRRWLKPAEVLFILQNHEKYELTQEPPQKPAGGSLYLFNKRVLRFFRKDGHSWRRKKDGRAIAEAHERLKVGNIEALNC 94 56699*************************************************************************** PP CG-1 84 yYahseenptfqrrcywlLeeelekivlvhyle 116 yYah+ +np+fqrr++w+L+ ++e+ivlvhy++ evm.model.supercontig_43.77 95 YYAHGGQNPNFQRRSFWMLDPSYEHIVLVHYRD 127 *****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.327	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	4.7E-73	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.2E-47	14	127	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MMQSEYDIEY LFQEAKRRWL KPAEVLFILQ NHEKYELTQE PPQKPAGGSL YLFNKRVLRF 60 FRKDGHSWRR KKDGRAIAEA HERLKVGNIE ALNCYYAHGG QNPNFQRRSF WMLDPSYEHI 120 VLVHYRDISE TCFCAFIALQ FSRLQSGADQ *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_43.77

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021899629.1	2e-95	calmodulin-binding transcription activator 4-like
Swissprot	Q9FYG2	2e-64	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A061E452	2e-74	A0A061E452_THECC; Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains isoform 2
STRING	evm.model.supercontig_43.77	1e-110	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM33759	2	2
Representative plant	OGRP562	15	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	8e-67	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_43.77

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]