PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_435.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 199aa    MW: 22898.6 Da    PI: 9.9996
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_435.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.23.2e-53121381128
                          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                  lppGfrFhP+deel+ +yL+kkv++k+l++ +vi+e+d+yk++Pw+Lpk++  +++ew+fFs+rd+ky++g r+nra++sgy
  evm.model.supercontig_435.1  12 LPPGFRFHPSDEELIIHYLQKKVTSKPLPA-SVIAEIDLYKHNPWELPKQALFGDDEWFFFSPRDRKYPNGARPNRAAASGY 92 
                                  79****************************.99***************8888899*************************** PP

                          NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  Wkatg+dk++l+++++ +g+kk+Lvfy gr pkg kt+W+m+eyrl
  evm.model.supercontig_435.1  93 WKATGTDKPILTSGSKSIGVKKSLVFYIGRPPKGAKTNWIMNEYRL 138
                                  ********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-638165IPR003441NAC domain
PROSITE profilePS5100559.44112165IPR003441NAC domain
PfamPF023651.8E-2713138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEVGEHNPIF HLPPGFRFHP SDEELIIHYL QKKVTSKPLP ASVIAEIDLY KHNPWELPKQ  60
ALFGDDEWFF FSPRDRKYPN GARPNRAAAS GYWKATGTDK PILTSGSKSI GVKKSLVFYI  120
GRPPKGAKTN WIMNEYRLLD TMIKPPRLKE SMRLDDWVLC RVRKKDMIKN MCEARDNNST  180
ESCIRPLQDV CLRAIRTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-7111657168NAC domain-containing protein 19
3swm_B3e-7111657168NAC domain-containing protein 19
3swm_C3e-7111657168NAC domain-containing protein 19
3swm_D3e-7111657168NAC domain-containing protein 19
3swp_A3e-7111657168NAC domain-containing protein 19
3swp_B3e-7111657168NAC domain-containing protein 19
3swp_C3e-7111657168NAC domain-containing protein 19
3swp_D3e-7111657168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_435.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909397.11e-135NAC transcription factor 25-like
SwissprotQ8GY423e-81NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A061GT653e-99A0A061GT65_THECC; NAC domain containing protein 25, putative
STRINGevm.model.supercontig_435.11e-147(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1798467
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-83NAC domain containing protein 25