PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_44.122
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HSF
Protein Properties Length: 357aa    MW: 41127.4 Da    PI: 4.7706
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_44.122genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35321242103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y+i++d +++++isws+ +nsfvv+d+++fa ++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+
  evm.model.supercontig_44.122  32 FLTKTYDIVDDLSTNNIISWSRGNNSFVVWDPQTFAMSLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFA 103
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                    + F +g+k+ll++i+r+k++
  evm.model.supercontig_44.122 104 SEGFLRGQKHLLKTIRRRKTS 124
                                   ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.2E-5928121IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-3728121IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.03E-3428121IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.5E-3132121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-193255IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-197082IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-198395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MNRQSRLKQE YSAAMDAPQP MAGLHDIGPP PFLTKTYDIV DDLSTNNIIS WSRGNNSFVV  60
WDPQTFAMSL LPKYFKHNNF SSFVRQLNTY GFRKVDPDRW EFASEGFLRG QKHLLKTIRR  120
RKTSQMQGSQ QALDPCVEVG RFGLDGEVDR LRRDKQALMV ELVKLRQQQQ TTKACLQDME  180
ERLVKTETKQ QQMMSFLARA MKNPSFVQQL LEQKERTRQL EDAIRKKRRR PIDQGPDNVI  240
IGELGQGGSE LENFVKLEPK EYGDMSELEV VSELDMLAMD MQGLDETQNN PQQQLMENTC  300
EELDGKRSKD KDQGFWEDLL DESMEEEMGL LGVEEENVDA LVEHLGYLGS SPDYRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-262112411123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213226KERTRQLEDAIRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_44.122
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899585.10.0heat stress transcription factor A-6b isoform X1
SwissprotQ9LUH81e-132HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2C9W9T21e-171A0A2C9W9T2_MANES; Uncharacterized protein
STRINGevm.model.supercontig_44.1220.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-128heat shock transcription factor A6B