PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_44.60
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 223aa    MW: 25536.8 Da    PI: 6.9242
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_44.60genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.2e-171461148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 +g+WT+eEd++l ++++++G  +W++ ++  g+ R++k+c++rw +yl
  evm.model.supercontig_44.60 14 KGPWTPEEDQILTNYIRKYGHANWRALPKLAGLLRCGKSCRLRWINYL 61
                                 79******************************99************97 PP
2Myb_DNA-binding56.18.4e-1867112148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                  rg++T+eE+e ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
  evm.model.supercontig_44.60  67 RGNFTPEEEETIINLHQILGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                                  89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-25564IPR009057Homeodomain-like
PROSITE profilePS5129416.513961IPR017930Myb domain
SuperFamilySSF466891.64E-3110108IPR009057Homeodomain-like
SMARTSM007175.9E-141363IPR001005SANT/Myb domain
PfamPF002491.3E-151461IPR001005SANT/Myb domain
CDDcd001671.00E-101661No hitNo description
PROSITE profilePS5129425.56362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2765117IPR009057Homeodomain-like
SMARTSM007173.4E-1566114IPR001005SANT/Myb domain
PfamPF002494.7E-1667112IPR001005SANT/Myb domain
CDDcd001675.64E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTPE EDQILTNYIR KYGHANWRAL PKLAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TPEEEETIIN LHQILGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRLKQKP  120
NTIISQIKNE PSSLTSKSSE TPTSSLPLSP QASSSEITNN MEDIFPEIDQ SFWSDFSEIS  180
NELEQDYSYY GLDSSVSGLD EFWYELFIRA GNGQDQLQQL WS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKRLKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_44.60
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899538.11e-165transcription factor MYB14-like
SwissprotQ9SJX88e-83MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A061ELW62e-86A0A061ELW6_THECC; Myb domain protein 13, putative
TrEMBLA0A218XN878e-87A0A218XN87_PUNGR; Uncharacterized protein
STRINGevm.model.supercontig_44.601e-165(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.17e-81myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]