PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_44.74
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 148aa    MW: 16411.8 Da    PI: 6.5402
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_44.74genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-191869256
                          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                                 +y+GVr+++ +g+++AeIrd +    + +r++lg+f taeeAa+a+++a+  ++g+
  evm.model.supercontig_44.74 18 RYRGVRRRP-WGKFAAEIRDSTR---HgARVWLGTFSTAEEAARAYDRAAYTMRGH 69
                                 6********.**********422...25**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-161877No hitNo description
Gene3DG3DSA:3.30.730.104.7E-311878IPR001471AP2/ERF domain
PROSITE profilePS5103223.6961876IPR001471AP2/ERF domain
SMARTSM003802.6E-341882IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-231877IPR016177DNA-binding domain
PfamPF008476.9E-151869IPR001471AP2/ERF domain
PRINTSPR003671.1E-111930IPR001471AP2/ERF domain
PRINTSPR003671.1E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MAEDSRAVNF KEGADQVRYR GVRRRPWGKF AAEIRDSTRH GARVWLGTFS TAEEAARAYD  60
RAAYTMRGHL AILNFPEEYP MGVSSSSSSS TYASSSSSSS SSSSFSSSSS SRRGNVEQSG  120
KQVFEFEYFD DNLLEELLDC EENKNKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-3811461127Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_44.74
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899574.11e-103ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC53e-47ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2I4F6652e-49A0A2I4F665_JUGRE; ethylene-responsive transcription factor ERF098-like
STRINGevm.model.supercontig_44.741e-103(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.16e-25ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]