PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_46.14

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

YABBY

Protein Properties

Length: 219aa MW: 24265.6 Da PI: 8.7711

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_46.14	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	204.6	3.8e-63	6	192	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee............... 70 + ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ ++++ evm.model.supercontig_46.14 6 DVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV-QRAVGFCghsctrasgpcpdps 86 5689********************************************999998884.5544433457889999999997 PP YABBY 71 .....lleelkveeenlksnvekeesastsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnP 145 +++ + + + + ++e +s++ s +k+ + ++++++ v+rPPekrqrvPsayn+fikeeiqrika+nP evm.model.supercontig_46.14 87 qqaraSSANKAPKYASPEPYRIHEWGSSSKCS-NKMsmRSPPNHKAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNP 167 65543233333333333334444433333333.3441244456666666779************************** PP YABBY 146 dishreafsaaaknWahfPkihfgl 170 dishreafs+aaknWahfP+ihfgl evm.model.supercontig_46.14 168 DISHREAFSTAAKNWAHFPHIHFGL 192 *********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.2E-67	8	192	IPR006780	YABBY protein
SuperFamily	SSF47095	6.02E-8	135	185	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.8E-4	140	186	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MSSCIDVAPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 WQDVQRAVGF CGHSCTRASG PCPDPSQQAR ASSANKAPKY ASPEPYRIHE WGSSSKCSNK 120 MSMRSPPNHK AAEERVVNRP PEKRQRVPSA YNQFIKEEIQ RIKANNPDIS HREAFSTAAK 180 NWAHFPHIHF GLMLESNNQA KADGTHDKHL MQRAALLK*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_46.14

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090216	2e-74	BT090216.1 Soybean clone JCVI-FLGm-3N14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021899266.1	1e-163	axial regulator YABBY 5-like isoform X1
Swissprot	Q8GW46	2e-80	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1Q3CQH7	1e-107	A0A1Q3CQH7_CEPFO; YABBY domain-containing protein
STRING	evm.model.supercontig_46.14	1e-163	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49
Representative plant	OGRP2210	12	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	8e-83	YABBY family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_46.14

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]