PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_47.60
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 109aa    MW: 11500.5 Da    PI: 8.7446
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_47.60genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.8e-0582105123
                                  EEETTTTEEESSHHHHHHHHHH.T CS
                      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                  ++C+ C+k F++   L++H +  H
  evm.model.supercontig_47.60  82 FSCSSCSKKFTSEVGLQSHTKAkH 105
                                  89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.29E-575104No hitNo description
PROSITE profilePS5015712.52882108IPR007087Zinc finger, C2H2
PROSITE patternPS00028084105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MSEDEDDESD DSDDEDEETP KKVEVSKKRA NESATKTPIP AKKAKAATPQ KTDGKKGGHT  60
ATPHPAKQAK NNSQSPKSGG QFSCSSCSKK FTSEVGLQSH TKAKHSGK*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_47.60
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899086.17e-70histone deacetylase HDT1-like
SwissprotQ8LJS21e-29HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA0A0D2SVG72e-38A0A0D2SVG7_GOSRA; Uncharacterized protein
STRINGevm.model.supercontig_47.603e-70(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.19e-07histone deacetylase 2C