PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_48.133
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GATA
Protein Properties Length: 178aa    MW: 19309.4 Da    PI: 10.8076
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_48.133genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.54.2e-192054135
                          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                  Cs C+tt TplWR gp g+k+LCnaCG++yrkk++
  evm.model.supercontig_48.133 20 CSDCKTTRTPLWRGGPAGPKSLCNACGIRYRKKRR 54
                                  ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-141465IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.04E-121755No hitNo description
Gene3DG3DSA:3.30.50.102.8E-151854IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.7E-172054IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.42050IPR000679Zinc finger, GATA-type
CDDcd002021.89E-112071No hitNo description
PROSITE patternPS0034402045IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDLKEKSCLS EDGIENRKCC SDCKTTRTPL WRGGPAGPKS LCNACGIRYR KKRRAMMCSG  60
NVPDKKKNRS NNSAASTAAT TNPYSTMINK RTPTGSANTL TSPQPGLTRV LKVKLKALGD  120
NFMLQTSNDS RSPSPSPSAP VPPVVVKKQR CQRRRKLKEE EQAAFLLMAL SCGSVFA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_48.133
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898795.11e-127GATA transcription factor 23 isoform X1
TrEMBLA0A2N9ITW33e-48A0A2N9ITW3_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_48.1331e-126(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16911712
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.11e-19GATA transcription factor 23