PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_48.191
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 499aa    MW: 56681.1 Da    PI: 7.4681
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_48.191genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.61.4e-1015881486
                                  T-EE--HHH.HTT...---...--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                            B3 14 grlvlpkkfaeeh...ggkke.esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                                  + l +p ++ae++         ++k+ + +d++g++W+++l   ++  +  l++ W  Fv+++gLk+g  ++F++++
  evm.model.supercontig_48.191 15 SGLQIPEDHAEHFglrH---GrTHKDFVANDREGNEWSFTLELLRHCHKPHLSGDWLLFVQEKGLKTGHKLTFSMEE 88
                                  5699******8886543...325679*****************99999999**********************9764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-9390IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-11390IPR015300DNA-binding pseudobarrel domain
CDDcd100173.43E-9388No hitNo description
SMARTSM010190.00124103IPR003340B3 DNA binding domain
PfamPF023624.8E-81688IPR003340B3 DNA binding domain
PROSITE profilePS508638.58617106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-7153237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-5155236IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.16156248IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MELFKKILED EDIWSGLQIP EDHAEHFGLR HGRTHKDFVA NDREGNEWSF TLELLRHCHK  60
PHLSGDWLLF VQEKGLKTGH KLTFSMEEQW DYRKRTVYKL KFQTTKPNEV YSETLVNMRI  120
FADNIETHFT PLRIPLRPIS ADPNILTPGY TGKELFRKNL SKIDVRDGLR IPKNLVRDLG  180
IPEGTDKVEF EAIDSAGKGR RFTILLPNDN PNWVMTWLPF VQEKGIRKGH SVAFYQKLNV  240
EEGGREYEIR VWAHVSGGQN TLDKGLLEKL EMWKAEDCCF PRPAEANPML VNRVRHAPGS  300
LSVKDRADAA PVKHRNVENN ANIDIQHSDG RSTETIKLII NRDRDLEASG GKDHEAPCKW  360
AASLSQKVTM QRLFVIANFT LEVISTIFDQ LSSADKPHYA IVGITASVTA MLVCILELIH  420
GALKPGGFKG FSIFPDIVGW VCAVCQCTVT FINCGFIIHG HIDPPIKISV WPITYAFFLL  480
WAMLNTTTDM RTLTQKES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_48.191
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898806.10.0uncharacterized protein LOC110815347
STRINGevm.model.supercontig_48.1910.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM383825