PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_48.72
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NF-YB
Protein Properties Length: 135aa    MW: 15082.8 Da    PI: 5.0201
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_48.72genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB157.81.8e-49397397
                        NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86
                                 ++d++lPianv+r+mk+vlP  akisk+ak+t+qec++efisfvt+easdkc++e+rkt+ngdd++wa++ lGf++y+e++  y
  evm.model.supercontig_48.72  3 DEDKLLPIANVGRLMKQVLPPSAKISKEAKQTMQECATEFISFVTAEASDKCHKENRKTVNGDDICWAFSALGFDEYAEAIIRY 86
                                 79********************************************************************************** PP

                        NF-YB 87 lkkyrelegek 97
                                 l+kyre+e++k
  evm.model.supercontig_48.72 87 LHKYREAERQK 97
                                 ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.3E-493123IPR009072Histone-fold
SuperFamilySSF471132.58E-394119IPR009072Histone-fold
PfamPF008084.1E-25870IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.7E-173553No hitNo description
PRINTSPR006152.7E-175472No hitNo description
PRINTSPR006152.7E-177391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MVDEDKLLPI ANVGRLMKQV LPPSAKISKE AKQTMQECAT EFISFVTAEA SDKCHKENRK  60
TVNGDDICWA FSALGFDEYA EAIIRYLHKY REAERQKANQ NKPANAQDKD EESNRSGQPS  120
SQQIDSNTAP IEFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-39192192Transcription factor HapC (Eurofung)
4g92_B8e-39192192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_48.72
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898882.14e-97nuclear transcription factor Y subunit B-4
SwissprotO040271e-59NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A061F3311e-70A0A061F331_THECC; Nuclear transcription factor Y subunit B-4
STRINGevm.model.supercontig_48.722e-96(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.15e-62nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]