PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_489.5
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 225aa    MW: 25033.3 Da    PI: 5.5055
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_489.5genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.71.8e-07160204655
                                  HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                  +++ r RR++i ++ ++L +l+P         K++ ae+ + A +Y+k+Lq
  evm.model.supercontig_489.5 160 SIAARERRRKITEKTQKLAKLIPGgH------KMNTAEMFQAASKYVKYLQ 204
                                  67889******************955......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.681154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-10157210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-8157207No hitNo description
SuperFamilySSF474591.14E-10158219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-5160204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-8160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MTGFQQVPFQ DFQLPPDDLL ASDCTHSSFS HLGSCNFIDP FLPDDPFHYS HQSSFPPEIL  60
ELECSFQYPK RQRTIHTNYY QPHVEQPSDF FNGYVPNPSS VPLPELFSLH ELPPPPPLMD  120
LQVPAVPSFF DTGKVVGGDD DDDDQNVKKA GNGVSLSAQS IAARERRRKI TEKTQKLAKL  180
IPGGHKMNTA EMFQAASKYV KYLQAQVGVL QLLSSLPQVT IMQA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_489.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907490.11e-160transcription factor bHLH52-like
TrEMBLB9I0X71e-39B9I0X7_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_489.51e-164(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Representative plantOGRP59691219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-19bHLH family protein