PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_49.71
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 197aa    MW: 22935.8 Da    PI: 7.1947
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_49.71genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28e-181865148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 rg+WT eEd  l+++++++G g+W+  a++ g++Rt+k+c++rw++yl
  evm.model.supercontig_49.71 18 RGPWTLEEDTVLAHYIARHGEGRWNMLAKCAGLKRTGKSCRLRWLNYL 65
                                 89********************************************97 PP
2Myb_DNA-binding53.46.1e-1771114146
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                  rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  evm.model.supercontig_49.71  71 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 114
                                  7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5451365IPR017930Myb domain
SuperFamilySSF466892.99E-3116112IPR009057Homeodomain-like
SMARTSM007176.8E-141767IPR001005SANT/Myb domain
PfamPF002498.7E-161865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-231972IPR009057Homeodomain-like
CDDcd001677.03E-112065No hitNo description
PROSITE patternPS0017503342IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129424.14666120IPR017930Myb domain
SMARTSM007172.6E-1570118IPR001005SANT/Myb domain
PfamPF002495.6E-1671114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2373117IPR009057Homeodomain-like
CDDcd001678.98E-1275114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MMRTRTVANE EETSELRRGP WTLEEDTVLA HYIARHGEGR WNMLAKCAGL KRTGKSCRLR  60
WLNYLKPDIK RGNLTPQEQL LILELHSKWG NRWSKIAQHL PGRTDNEIKN YWRTRQRSTT  120
PHLYSNTQQT HIPNHANYSL DNDMAAYVAS ISSAVLPNYY ESFPPPDCQI LDADWPSSND  180
VADVLRDMDD IWYFME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-25151171102MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-251511724125MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_49.71
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898606.12e-81transcription factor MYB62-like
SwissprotQ9C9G74e-63MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A1Q3BER32e-69A0A1Q3BER3_CEPFO; Myb_DNA-binding domain-containing protein
STRINGevm.model.supercontig_49.711e-146(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-65myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]