PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_5.180
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 119aa    MW: 13370.8 Da    PI: 7.1605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_5.180genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12e-1081109230
                                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                          HLH   2 rrahnerErrRRdriNsafeeLrellPka 30 
                                  +  hn+ Er RR+++N+ f+ Lr+llP++
  evm.model.supercontig_5.180  81 KLDHNASERDRRRKLNTLFSSLRSLLPTS 109
                                  678************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.97679118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-879111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.70E-980112No hitNo description
Gene3DG3DSA:4.10.280.103.7E-880110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-881109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MCALYPFLPN WNWPLADPIG HEDNYVNYYR DDQGTLDSVL HFPLSSPNVF EPKHSPSFTT  60
NNVTSSDSNG GVGARKSIAK KLDHNASERD RRRKLNTLFS SLRSLLPTSD HNVHEFPT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_5.180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908559.15e-79transcription factor ORG2-like
STRINGevm.model.supercontig_5.1809e-83(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Representative plantOGRP28261129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-17bHLH family protein