PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_5.261

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

TCP

Protein Properties

Length: 206aa MW: 22000.4 Da PI: 7.1089

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_5.261	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.3	1.7e-35	36	164	6	89
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssas 83 +++ ++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg+++ +a ++ s+ evm.model.supercontig_5.261 36 SSSRDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGSGTVPAAQVsssaG--PAPLSS- 114 6789********************************************************7777733322111..111111. PP TCP 84 nsssg................................................k 89 + + evm.model.supercontig_5.261 115 ----SpssvscrvhpvgvggaqgiftmgpppscrldlcqpvglqysttagngfR 164 ....11222344444555555555566666666666665555444444444441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.1E-31	37	179	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.172	38	92	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MVLNDFSSTE HNHHHNSNLN SLNESSPVVP RKSASSSSRD RHTKVNGRGR RVRMPALCAA 60 RIFQLTRELG HRSDGETIEW LLRQAEPSII AATGSGTVPA AQVSSSAGPA PLSSSPSSVS 120 CRVHPVGVGG AQGIFTMGPP PSCRLDLCQP VGLQYSTTAG NGFRHMPFTA LLLQPVTAAA 180 AEEDEETDDK QRQQQGVLED HHEHQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_5.261

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021908705.1	1e-150	transcription factor TCP11-like
Swissprot	Q9SJK7	2e-44	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A061ETZ0	3e-83	A0A061ETZ0_THECC; Proliferating cell nuclear antigen gene-controlling element binding factor, putative
STRING	evm.model.supercontig_5.261	1e-150	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15265	16	18
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	2e-44	TCP family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_5.261