PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_5.66
Common NameCBF1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 177aa    MW: 19827.2 Da    PI: 4.8432
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_5.66genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.6e-171767156
                         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                + ykGVr+  ++g+Wv+e r+p   +k+ r+++g+f ++e+Aa+a++ a+++l+ge
  evm.model.supercontig_5.66 17 PVYKGVRR--RNGKWVCETREP---NKQSRIWVGTFSSPEMAARAHDVAALALRGE 67
                                68****85..47******8887...336**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.2E-131767IPR001471AP2/ERF domain
PROSITE profilePS5103219.3881875IPR001471AP2/ERF domain
SMARTSM003802.2E-231881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-251876IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-161877IPR016177DNA-binding domain
CDDcd000185.34E-251976No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MQKRKAGRKK FQETRHPVYK GVRRRNGKWV CETREPNKQS RIWVGTFSSP EMAARAHDVA  60
ALALRGESSA SLNFPDEIRA LPRAKSSAIR DIQCAAMEAA EVFRNTGDSS SAINVHGDDD  120
QEDEGMVFLD EDEVFNMPAI LHSMAEGLIL APPSVQRECT WDDDMEDEVE LALWSY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_5.66
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX0475530.0JX047553.1 Carica papaya CBF/DREB1 transcription factor 1 (CBF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908755.11e-130dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI43e-54DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z53e-54DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLX2C0821e-128X2C082_CARPA; CBF/DREB1 transcription factor 1
STRINGevm.model.supercontig_5.661e-129(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.13e-42C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]