PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_5.71
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 195aa    MW: 20928.2 Da    PI: 4.8629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_5.71genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-183181155
                         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                + y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  evm.model.supercontig_5.71 31 PVYRGVRRRS-SGKWVSEIREPR----KpNRIWLGTFPTPEMAAIAYDVAALALKG 81
                                68*****888.8*********94....478***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-113181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-303291IPR001471AP2/ERF domain
PROSITE profilePS5103223.1033289IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-213291IPR016177DNA-binding domain
SMARTSM003801.3E-343295IPR001471AP2/ERF domain
PRINTSPR003675.9E-113344IPR001471AP2/ERF domain
CDDcd000183.38E-313391No hitNo description
PRINTSPR003675.9E-117191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MQYYSKPTNK ASSSSSGSSR SNVSSVTGRH PVYRGVRRRS SGKWVSEIRE PRKPNRIWLG  60
TFPTPEMAAI AYDVAALALK GRDAELNFPN SASSLPVPES NSPRDIQSAA ASAAAALGAA  120
NDALSANENA RNDENVTTTA ERSSMVNEFV DEDLIFDMPN LLVNMAEGML VSPPRLDIAD  180
DDAATADHDL WKFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-162590773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_5.71
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908529.11e-139ethylene-responsive transcription factor ERF024
SwissprotQ9SJR06e-58ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A2C9VCX73e-81A0A2C9VCX7_MANES; Uncharacterized protein
STRINGevm.model.supercontig_5.711e-138(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.16e-44ERF family protein