PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_5.85
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 133aa    MW: 13981.9 Da    PI: 4.8594
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_5.85genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.8e-06105128123
                                 EEETTTTEEESSHHHHHHHHHH.T CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                 y+C+ C++sF++   L++H +  H
  evm.model.supercontig_5.85 105 YPCKSCNRSFTSETGLQSHTKAkH 128
                                 99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0042105128IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.928105132IPR007087Zinc finger, C2H2
PROSITE patternPS000280107128IPR007087Zinc finger, C2H2
PfamPF128747.7E-5107127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MIQVPGVNGE DESSDDDESD EEDDDSDEDD TSDDETPKKP EPSKKRPAES ALKTPVSDKK  60
AKLGTTQKSA GGHVATPYPS KQGGKKPGNS EQTKQQTTPK SAGSYPCKSC NRSFTSETGL  120
QSHTKAKHGT AA*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_5.85
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908534.13e-87histone deacetylase HDT1-like
SwissprotQ8LJS22e-26HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLF6HKH55e-32F6HKH5_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_5.854e-89(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.15e-25histone deacetylase 2C