PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_50.154

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

LBD

Protein Properties

Length: 87aa MW: 9772.22 Da PI: 5.7154

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_50.154	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	41	5.4e-13	1	43	58	100
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 m+sl +eA++r++dPvyG+vg+i+ lq+q+++++++la++++e evm.model.supercontig_50.154 1 MDSLNFEAQCRIEDPVYGCVGIISLLQKQIQKAETQLAKMQAE 43 79************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.485	1	44	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.6E-11	1	41	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MDSLNFEAQC RIEDPVYGCV GIISLLQKQI QKAETQLAKM QAEIAVYSSY FAHFDNFSPI 60 PFSIINTSKL TYWLTQAGFR SCLNNI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_50.154

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021910100.1	6e-21	LOB domain-containing protein 24-like
Swissprot	P59468	5e-17	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A1R3K629	8e-17	A0A1R3K629_9ROSI; Uncharacterized protein
STRING	evm.model.supercontig_50.154	1e-58	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-19	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_50.154