PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_50.37
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 599aa    MW: 66090.6 Da    PI: 5.5346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_50.37genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.46.8e-054524891355
                                  HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                  R+ i +++ eLrel+P+ +      K s  + Le+++++I  Lq
  evm.model.supercontig_50.37 452 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHILFLQ 489
                                  77899************55......888888***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.4E-83872IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.54E-4433489No hitNo description
PROSITE profilePS5088811.808439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-6452506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-4452496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MLEVAYKQLR FTNLSSKPND LKCREEIKSR PRQKFDLTIV VVAVVPQGVV QLGSLNKVTE  60
DEKLVTHVRD VFYALQDPLV GHVKNLVQQS MKSSVSLSNL PAKTLASEVT DSLWSSAHPK  120
KTVEVACKPA GMEISMSESE EGANLLQPGG KVVNMKCENQ VEMNFISSGF YEGETSGWKD  180
LTVRSGHSLN LHSNNSITND ISLCDFALEA EKLKVDRTCF ASAILDSAVC DPVKMDGSES  240
YQDGMPSVAK SSNLKFQKDS EECKSLSKLS QLDSANLAFK YSAGWELLEA LGPAFQKQSN  300
YVDWEIDKAE SVTFTEMTEG MNSSQLTFES GSENLLEAVV ANICHSSSDV KSERSFCKSM  360
QSLLTTDEMA ESSGYTKHTI DSAGCPINQS HFIDGDMQQH SSEICGGLPS RGYSSTCPSS  420
CSEPLDMSSE RAKNSRKRAR PGENSRPRPR DRQLIQDRIK ELRELVPNGS KCSIDSLLER  480
TIKHILFLQS ITKHADELSK CSELKMHQRG TGSSSYEQGS TWAVEVGSHL KVCSIIVENL  540
NKTGQMLVQM LCEECSHFLE IAEAIKSLGL TILKGVTEAH GEKDMDMFYG LRYDSNFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_50.37
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898392.10.0transcription factor bHLH155 isoform X1
TrEMBLA0A1R3I7A60.0A0A1R3I7A6_COCAP; Uncharacterized protein
STRINGevm.model.supercontig_50.370.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20832030
Representative plantOGRP995734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-122conserved peptide upstream open reading frame 7