PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_50.50
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 179aa    MW: 20694.6 Da    PI: 9.7187
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_50.50genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000214163123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                 y C+ C + F++   L  H+++H
  evm.model.supercontig_50.50 41 YACSFCRREFRSAQALGGHMNVH 63
                                 89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.14E-63867No hitNo description
Gene3DG3DSA:3.30.160.606.7E-43966IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-54164IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1774168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MERKYMMRST GHKLRETDWN CKSLGLEGEN SDGLTWPPKN YACSFCRREF RSAQALGGHM  60
NVHRRDRARL RQLPSWLFDS PNYTNSTFNN FGRVPSPDYS LNFLPTTRSL LCPSLFKPTQ  120
HKNLFGNKPV LDLNRSCNRK KCDLEALKKG DRVTSLELQM GMKDPEEVLD LELRLGYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-123663229superman protein
2l1o_A4e-123663229Transcriptional regulator SUPERMAN
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_50.50
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898316.11e-131zinc finger protein 11
STRINGevm.model.supercontig_50.501e-130(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.14e-36zinc finger protein 11